Please check the following:
- Do you have the option "Ignore Creator Code" enabled or disabled (in menu "View")?
- Are all PDFs shown with the kind "AIFF audio file"?
- What kind is given for these files in the Finder's "Get Info..." window? (Tip: use the context menu's command "Reveal in Finder" to easily find the file(s))
If you disable the option "Ignore Creator Code", the kinds shown in Disk Inventory X should be the same as in the Finder.
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